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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57420189_57421846_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57420189 - 57421846
Intron Length:
1658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAA
U12 Branch Point Sequence:
AGAGACAAAAGG
Flanking Amino Acid:
LDMVTLHRFLVMVQEDYHSQ
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
47
-0.1
1.1
51.2
32
Major PPT
81
0.7
0.9
72.8
42.2
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
33.9
-1.3
2
33.28
39.7

Associated Gene:

Gene:
PDE7B
Ensembl Gene ID:
ENSAPLG00000007602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038065
57404526 - 57577231
172706
ENSAPLT00000036599
57404526 - 57577231
172706
ENSAPLT00000007953
57404526 - 57485702
81177