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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57423667_57424939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57423667 - 57424939
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CCTCTTTGAATT
Flanking Amino Acid:
LDEDYLGQARHMLSKVGMWD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
52.3
0.15
1.4
65.05
40.4

Associated Gene:

Gene:
PDE7B
Ensembl Gene ID:
ENSAPLG00000007602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036599
57404526 - 57577231
172706
ENSAPLT00000007953
57404526 - 57485702
81177
ENSAPLT00000038065
57404526 - 57577231
172706