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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57438812_57485478_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57438812 - 57485478
Intron Length:
46667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CCCCTATTAACG
Flanking Amino Acid:
ESDDALGGSAGDARVRGQTG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
48.5
-0.2
1.7
48.98
44.8

Associated Gene:

Gene:
PDE7B
Ensembl Gene ID:
ENSAPLG00000007602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007953
57404526 - 57485702
81177