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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57671184_57671863_R

Intron Information:

Intron Rank:
147594
Intron Class:
major
Intron Phase:
Intron Coordinates:
57671184 - 57671863
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CACTATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77
0.61
0.9
73.1
36.6
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026764
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041423
57670754 - 57672506
1753