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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57752549_57754041_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57752549 - 57754041
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
CTTTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTATTCTTACTT
Flanking Amino Acid:
FINTLCFDAEGLHMFSGDSS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84.5
0.78
0.8
79.4
32.2
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
63.7
0.51
1.6
76.98
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008006
57740223 - 57800491
60269