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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57754146_57754727_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57754146 - 57754727
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTGA
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGAGTTTTAAAA
Flanking Amino Acid:
HLFQNWRINKEIKENDIRGT
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
60.9
40.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.3
0.77
0.7
80.7
24.6
Minor 5ss
48.7
-0.1
2.6
64.8
46.5
Minor BPS
54.6
0.14
1.5
61.56
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008006
57740223 - 57800491
60269