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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57754847_57757830_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57754847 - 57757830
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATCT
Flanking Amino Acid:
DSTLRVMDLRILATKKYIGA
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.5
0.84
0.7
85.5
27.9
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008006
57740223 - 57800491
60269