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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57757962_57758928_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57757962 - 57758928
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATAACCATATTT
Flanking Amino Acid:
GKAYVWNPETGDQVAIYSEL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
81.1
0.7
0.8
76.8
31.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
49
0.01
1.9
69.41
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008006
57740223 - 57800491
60269