About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57776878_57795554_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57776878 - 57795554
Intron Length:
18677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
NPLYAFTAKSGCFSPVGNPL
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.9
34.1
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
59.5
0.32
2.3
76.1
39.5
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008006
57740223 - 57800491
60269