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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57859373_57859458_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57859373 - 57859458
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGTTCTGGGACT
Flanking Amino Acid:
EIKYGPLKMLPQTPTHLVED
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
49.7
0.06
2.2
76.45
40.3

Associated Gene:

Gene:
MYB
Ensembl Gene ID:
ENSAPLG00000007728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042023
57847908 - 57878159
30252
ENSAPLT00000008072
57847908 - 57878159
30252