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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57859574_57859964_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57859574 - 57859964
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CCTCTTTCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTTCCTTTAAAG
Flanking Amino Acid:
QTFKTQKENHVFRTPAIKRS
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
73.2
0.52
1
73.9
28.6
Minor 5ss
39.8
-1.1
3
51.2
45.1
Minor BPS
65
0.33
1.5
67.2
40

Associated Gene:

Gene:
MYB
Ensembl Gene ID:
ENSAPLG00000007728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042023
57847908 - 57878159
30252
ENSAPLT00000008072
57847908 - 57878159
30252