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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57860108_57863079_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57860108 - 57863079
Intron Length:
2972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCCTGCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATTT
Flanking Amino Acid:
FAETLQLIDSFLNTSSNHEN
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.2
0.66
0.8
72.5
32.4
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
49
0
2.1
72.32
45

Associated Gene:

Gene:
MYB
Ensembl Gene ID:
ENSAPLG00000007728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042023
57847908 - 57878159
30252