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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57862023_57863079_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57862023 - 57863079
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CACGTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TGTCTTATAGCT
Flanking Amino Acid:
FAETLQLIDSDPSSWGDLSS
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
72.4
0.5
1
68.5
41.8
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
48.6
-0
1.8
70.89
39.8

Associated Gene:

Gene:
MYB
Ensembl Gene ID:
ENSAPLG00000007728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008072
57847908 - 57878159
30252