About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57867984_57868411_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
57867984 - 57868411

Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAATCAGT

5'SS Class:
major

3'SS Sequence:
TCCTTCTTTGAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
CCTTCTTTGAAG

Flanking Amino Acid:
GPWTKEEDQRVIELVQKYGP

Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.6
0.49
1.1
65.5
45.9

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
76.8
0.6
1
78.4
27.7

Minor 5ss
40.7
-1
2.9
49.6
46.4

Minor BPS
57.8
0.1
1.6
58.91
43.4

Associated Gene:

Gene:
MYB

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

57847908 - 57878159
30252

57847908 - 57878159
30252