About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57868505_57869224_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
57868505 - 57869224

Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCT|GTAGGTGGA

5'SS Class:
major

3'SS Sequence:
TACATTTCACTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAA

U12 Branch Point Sequence:
TTACATTTCACT

Flanking Amino Acid:
DWKVIANFLPNRTDVQCQHR

Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.6
0.32
1.2
56.6
42.7

Major BPS
90.8
1.01
0.7
91.9
19.6

Major PPT
66
0.36
0.9
59.7
41.2

Minor 5ss
33.6
-1.9
3.5
48.9
47.3

Minor BPS
52.2
0.15
1.9
75.33
41.1

Associated Gene:

Gene:
MYB

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

57847908 - 57878159
30252

57847908 - 57878159
30252