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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57871040_57878136_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57871040 - 57878136
Intron Length:
7097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCCTTCTGC
Flanking Amino Acid:
MARRPRHSIYSSDDDEE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
58.7
46.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
36.6
-1.5
3.3
51
45.6
Minor BPS
40.9
-0.7
3.7
66.76
44.8

Associated Gene:

Gene:
MYB
Ensembl Gene ID:
ENSAPLG00000007728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042023
57847908 - 57878159
30252
ENSAPLT00000008072
57847908 - 57878159
30252