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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5787683_5787778_R

Intron Information:

Intron Rank:
134391
Intron Class:
major
Intron Phase:
Intron Coordinates:
5787683 - 5787778
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.4
0.71
0.9
77.3
36
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
82.4
0.88
1.1
82.57
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047830
5787030 - 5789150
2121