Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57927511_57929161_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57927511 - 57929161

Intron Length:

1651

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTACCTAATATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTACCT

Flanking Amino Acid:

EDDYCISPSTAAQFIYSRRD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

1.1

32.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.2

0.41

0.9

37.2

Minor 5ss

37.8

-1.4

2.6

45.9

42.2

Minor BPS

68.3

0.65

1.6

83.79

37.4

Associated Gene:

Gene:

HBS1L

Ensembl Gene ID:

ENSAPLG00000007791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008157

57925574 - 57985741

60168

ENSAPLT00000043832

57925574 - 57962269

36696

ENSAPLT00000039273

57925574 - 57962015

36442

ENSAPLT00000018922

57925574 - 57934721

9148