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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57929300_57932400_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57929300 - 57932400
Intron Length:
3101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CAGTTTATAACA
Flanking Amino Acid:
SNHQLGDVDRARLNSCLDQM
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
84.6
0.78
0.7
81.1
30.9
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
52.7
0.08
1.6
60.5
39.8

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039273
57925574 - 57962015
36442
ENSAPLT00000018922
57925574 - 57934721
9148
ENSAPLT00000008157
57925574 - 57985741
60168
ENSAPLT00000043832
57925574 - 57962269
36696