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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57960357_57962005_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57960357 - 57962005
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
GAAGGATGAAAT
Flanking Amino Acid:
KKQSMGFEVPWLE*
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
38.6
-0.7
2
50.75
42

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039273
57925574 - 57962015
36442