About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57960357_57962265_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57960357 - 57962265
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTGTATTGACA
Flanking Amino Acid:
KKQSMGFEVPC*
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
76.2
0.59
1.1
80
36.9
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
55.6
0.17
1.7
69.2
36.8

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043832
57925574 - 57962269
36696