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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57968996_57969448_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57968996 - 57969448
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATACAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCCATA
Flanking Amino Acid:
GKQLLNLVVIGHVDAGKSTL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.4
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.3
0.7
0.7
77.1
25
Minor 5ss
31.4
-2.1
3
38.9
46.2
Minor BPS
62.9
0.4
2
79.52
37.1

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168