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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57969615_57970568_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57969615 - 57970568
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATA
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AAAACATTACTA
Flanking Amino Acid:
VLDETGEERERGVTMDVGMT
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.9
0.47
1.1
74.8
39.1
Minor 5ss
35
-1.7
3.4
48.3
47.4
Minor BPS
46.3
-0.2
1.8
54.2
37.7

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168