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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57973589_57974285_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57973589 - 57974285
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATAAACT
Flanking Amino Acid:
LAVAVNKMDQVNWQQERFQE
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.9
34.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86.9
0.83
0.7
86.2
26.5
Minor 5ss
40.7
-1
3.1
60.4
44
Minor BPS
64.6
0.54
2
85.11
41.3

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168