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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57974361_57975133_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57974361 - 57975133
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATAATT
Flanking Amino Acid:
GQFLKQAGFKESDVAYIPTS
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.7
0.49
1
72.5
36.9
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
70.9
0.73
1.5
87.01
32

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168