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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57975252_57975433_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57975252 - 57975433
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
YTGKCLLEQIDSFKPPQRSV
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.8
0.76
0.8
77.8
35.5
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168