Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57975503_57978602_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57975503 - 57978602

Intron Length:

3100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTTGT

5'SS Class:

major

3'SS Sequence:

GTGTTTATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

GTTGTTTCAAAT

Flanking Amino Acid:

FRLCVADVFKDQGSGFCVTG

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

70.9

41.9

Major BPS

77.3

0.68

81.5

Major PPT

79.8

0.67

0.9

74.1

40.3

Minor 5ss

36.9

-1.5

3.1

50.4

45.9

Minor BPS

49.8

0.07

1.7

69.61

41.4

Associated Gene:

Gene:

HBS1L

Ensembl Gene ID:

ENSAPLG00000007791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008157

57925574 - 57985741

60168