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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57980828_57982351_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57980828 - 57982351
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCATTTCTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATTT
Flanking Amino Acid:
TLTGMDIIKINVGCVFCDPK
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73
33.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.1
0.61
0.8
73.3
31.3
Minor 5ss
35
-1.7
2.9
39.8
40.3
Minor BPS
55.6
0.25
1.8
75.42
42

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168