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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57982461_57983088_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57982461 - 57983088
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
AAAATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTTATAATA
Flanking Amino Acid:
IEVPITKGFPVLLHYQTVSE
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
69.5
41.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.5
0.33
1
60.1
45
Minor 5ss
41.7
-0.9
3.1
63.6
40.6
Minor BPS
62.4
0.39
1.5
72.8
32.8

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168