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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57984186_57985134_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57984186 - 57985134
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
STIAAGVVTEIKE*
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
HBS1L
Ensembl Gene ID:
ENSAPLG00000007791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008157
57925574 - 57985741
60168