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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57993808_57994997_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57993808 - 57994997
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGATGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
HYTSREPVGVAGLISPWNLP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
59.7
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
37.4
-1.4
3.3
47.7
43.2
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
ALDH8A1
Ensembl Gene ID:
ENSAPLG00000007873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008183
57988619 - 57999385
10767