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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_57996976_57998336_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57996976 - 57998336
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATGAT
U12 Branch Point Sequence:
TGTCCTTTAGGA
Flanking Amino Acid:
ALISKEHLEKVRSYVKRAQA
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
59.1
0.23
1.3
51.7
43.9
Major PPT
75.7
0.58
0.9
72.9
37.4
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
51.3
0.04
1.9
65.5
40.9

Associated Gene:

Gene:
ALDH8A1
Ensembl Gene ID:
ENSAPLG00000007873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008183
57988619 - 57999385
10767