About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58041247_58041384_F

Intron Information:

Intron Rank:
126400
Intron Class:
major
Intron Phase:
Intron Coordinates:
58041247 - 58041384
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TAAACGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
78.5
0.64
0.8
72.7
31.8
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
48.3
-0
2.3
70.93
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018107
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027616
58040803 - 58042601
1799