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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58041442_58042342_F

Intron Information:

Intron Rank:
126401
Intron Class:
major
Intron Phase:
Intron Coordinates:
58041442 - 58042342
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
ATTTACCAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
45.6
-0.2
2.3
72.12
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018107
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027616
58040803 - 58042601
1799