Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58129190_58143720_F

Intron Information:

Intron Rank:

136956

Intron Class:

major

Intron Phase:

Intron Coordinates:

58129190 - 58143720

Intron Length:

14531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCCAAT

U12 Branch Point Sequence:

TCTGTCCAATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

80.5

33.7

Major BPS

54.1

0.1

1.4

64.7

Major PPT

95.2

1.02

0.5

28.1

Minor 5ss

-1.6

3.3

45.4

43.9

Minor BPS

42.6

-0.4

2.2

63.33

47.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035422

58128785 - 58144016

15232