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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58152698_58152841_R

Intron Information:

Intron Rank:
149887
Intron Class:
major
Intron Phase:
Intron Coordinates:
58152698 - 58152841
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTCA
5'SS Class:
major
3'SS Sequence:
CTCTATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTCTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.6
39.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.1
0.57
1
71.4
38.1
Minor 5ss
39.5
-1.2
2.8
48.8
46.9
Minor BPS
53.6
0.19
1.9
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028198
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032791
58152420 - 58153480
1061