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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58152995_58153096_R

Intron Information:

Intron Rank:
149888
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
58152995 - 58153096
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCAG
5'SS Class:
weak_major
3'SS Sequence:
CCTTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CCCTCATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
52.4
46.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81.1
0.7
0.7
75.7
26.5
Minor 5ss
48.8
-0.1
2.6
64.4
47
Minor BPS
60.5
0.41
1.7
71.98
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028198
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032791
58152420 - 58153480
1061