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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58334124_58334214_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
58334124 - 58334214
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCAAG
5'SS Class:
major
3'SS Sequence:
CTTGCAAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACTT
Flanking Amino Acid:
MAAFSQEGKLS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
63.2
42.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
58.8
0.2
1.1
52.6
39.8
Minor 5ss
45
-0.5
2.6
53.6
44.9
Minor BPS
55.6
0.25
1.9
77.53
39.1

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045669
58334121 - 58385301
51181