Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58334794_58357713_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58334794 - 58357713

Intron Length:

22920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCCAG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTCGAT

U12 Branch Point Sequence:

TCTCTGGTGACT

Flanking Amino Acid:

CSWESQPSSKAKEPHSRGEP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

68.8

43.8

Major BPS

52.4

0.06

1.3

52.1

43.1

Major PPT

91.1

0.92

0.6

87.3

23.2

Minor 5ss

37.2

-1.4

46.7

48.6

Minor BPS

43.6

-0.4

2.6

67.54

43.8

Associated Gene:

Gene:

SGK1

Ensembl Gene ID:

ENSAPLG00000007896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045669

58334121 - 58385301

51181

ENSAPLT00000021008

58308968 - 58385301

76334

ENSAPLT00000018823

58308968 - 58385301

76334