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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58357790_58380842_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58357790 - 58380842
Intron Length:
23053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
TRPLWGSDDTAFMKQRRMGL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.9
0.83
0.7
85.6
28.6
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045669
58334121 - 58385301
51181
ENSAPLT00000021008
58308968 - 58385301
76334
ENSAPLT00000018823
58308968 - 58385301
76334