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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58380919_58381352_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58380919 - 58381352
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTCTCCTTACAG
Flanking Amino Acid:
KIATNSYACKHPEVQSILKI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
89.8
0.9
0.6
84.3
23.7
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
62.1
0.24
1.8
68.4
44.9

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021008
58308968 - 58385301
76334
ENSAPLT00000019214
58380163 - 58385301
5139
ENSAPLT00000018823
58308968 - 58385301
76334
ENSAPLT00000008278
58379178 - 58385301
6124
ENSAPLT00000045669
58334121 - 58385301
51181