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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58382765_58383044_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58382765 - 58383044
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
GTTTACAGAACT
Flanking Amino Acid:
FVLDYINGGELFYHLQRERC
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
58.8
0.22
1.6
75
40
Major PPT
79.4
0.66
0.8
73.5
31.5
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
55.6
0.26
1.9
80.52
40.2

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018823
58308968 - 58385301
76334
ENSAPLT00000008278
58379178 - 58385301
6124
ENSAPLT00000045669
58334121 - 58385301
51181
ENSAPLT00000021008
58308968 - 58385301
76334
ENSAPLT00000019214
58380163 - 58385301
5139