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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58383438_58383736_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58383438 - 58383736
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAA
U12 Branch Point Sequence:
TCTTCTTCCACA
Flanking Amino Acid:
TTSTFCGTPEYLAPEVLHKQ
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
49.8
-0
1.1
59
36.1
Major PPT
84.4
0.77
0.7
79.7
25.8
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
55.6
0.17
2
71.01
41.7

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019214
58380163 - 58385301
5139
ENSAPLT00000018823
58308968 - 58385301
76334
ENSAPLT00000008278
58379178 - 58385301
6124
ENSAPLT00000045669
58334121 - 58385301
51181
ENSAPLT00000021008
58308968 - 58385301
76334