About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58383833_58383949_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58383833 - 58383949
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GCCTCATTAACT
Flanking Amino Acid:
AVLYEMLYGLPPFYSRNTAE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
71.9
0.49
0.9
64.8
36.5
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
67.7
0.63
1.7
77.89
44.1

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008278
58379178 - 58385301
6124
ENSAPLT00000045669
58334121 - 58385301
51181
ENSAPLT00000021008
58308968 - 58385301
76334
ENSAPLT00000019214
58380163 - 58385301
5139
ENSAPLT00000018823
58308968 - 58385301
76334