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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58384106_58384842_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58384106 - 58384842
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCCTTTCAACA
Flanking Amino Acid:
TKRLGAKEDFSGPSDLRHFD
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
69.3
36.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.4
0.59
0.8
72.6
30.7
Minor 5ss
36.5
-1.5
3.2
51
39.8
Minor BPS
51.5
0.04
1.5
60
40.4

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021008
58308968 - 58385301
76334