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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58384306_58384842_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58384306 - 58384842
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCCTTTCAACA
Flanking Amino Acid:
KITPPFNPNVSGPSDLRHFD
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
78.1
36.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.4
0.59
0.8
72.6
30.7
Minor 5ss
39.4
-1.2
3
50.9
40.1
Minor BPS
51.5
0.04
1.5
60
40.4

Associated Gene:

Gene:
SGK1
Ensembl Gene ID:
ENSAPLG00000007896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018823
58308968 - 58385301
76334
ENSAPLT00000008278
58379178 - 58385301
6124
ENSAPLT00000045669
58334121 - 58385301
51181
ENSAPLT00000019214
58380163 - 58385301
5139