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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58425036_58440216_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58425036 - 58440216
Intron Length:
15181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
VAAFSIGLGPMSWLVLSEIF
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.5
0.78
0.8
81.8
28.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
SLC2A12
Ensembl Gene ID:
ENSAPLG00000007989
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008286
58416893 - 58444074
27182