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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58454471_58454565_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58454471 - 58454565
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
AGTTCCAGACCT
Flanking Amino Acid:
EFTKNNRPHASYEPELHPAV
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.3
39.1
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
42.2
-0.9
3.1
54.5
49.7
Minor BPS
49.3
0.02
2
73.59
42.5

Associated Gene:

Gene:
TBPL1
Ensembl Gene ID:
ENSAPLG00000007996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008314
58451527 - 58459107
7581