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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58454670_58456373_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58454670 - 58456373
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTGAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTCTTTTGAAAA
Flanking Amino Acid:
ARSLQKLGFQVIFTDFKVVN
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
63.3
0.3
1.1
67
37.2
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
51.3
0.04
1.5
60.4
40

Associated Gene:

Gene:
TBPL1
Ensembl Gene ID:
ENSAPLG00000007996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008314
58451527 - 58459107
7581