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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58456438_58458242_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58456438 - 58458242
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATG
Flanking Amino Acid:
SGKVICTGATSEEEAKFGAR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86
0.81
0.8
80.4
31.5
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
64.1
0.3
2.1
74.4
38.6

Associated Gene:

Gene:
TBPL1
Ensembl Gene ID:
ENSAPLG00000007996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008314
58451527 - 58459107
7581